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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015943965.1_cds_XP_016486903.1_77696
CDS Infomation

[gene=LOC107807111] [db_xref=GeneID:107807111] [protein=LOW QUALITY PROTEIN: probable zinc metalloprotease EGY1, chloroplastic] [exception=unclassified translation discrepancy] [protein_id=XP_016486903.1] [location=complement(join(3768..3926,4047..4085,4087..4098,5613..5681,6090..6159,6233..6283,6793..7004,8014..8115,9603..9743,9862..10323,12160..12486))] [gbkey=CDS]
Sequence

ATGGGAACGCTAACGAGCTGCAGTTTCAGCTCAATGAATATAAGGTTCCGTTTGAATCCT
CCAGTTAATTACACTTTCAGTCGAAGAATCCAATTGAAGAGAATGTCCAAACGGAATTTC
GGTCGATTGATTATTAGGTGTAGTAGCGGTAGTAGTGGCAATGGCAGTAGCAATGACAGT
GGTAGCAGTAGCGATGGGAAATTGGAAAAGGATTCTTCAAATTTGGCTACAGTTACTGAA
GAAACCACTGAAGAAAGGAACGGCGGCGGTGGCGCCAGCGGTGTGGAAAATGATTCGGAT
GATTCTCCGGTGTCAATTTCTTCCAGACCAACAATATCCACTGTTGGATCAACTTATAAT
AATTTCCAAGTAGATTCTTTTAAGTTGATGGAACTTCTTGGACCAGAAAAGGTTGATCCC
AGTGATGTGAAGTTCATTAAGGAAAAGTTATTTGGCTACTCTACTTTTTGGGTGACTAAA
GAAGAACCATTTGGAGATCTTGGAGAGGGCATTCTTTTCCTTGGGAATCTTAGAGGAAAG
AGGGAGGATGTTTTTGCCAAACTTCAGAGTCAGTTATCAGAAATTATGGGTGATAAGTAC
AACCTGTTCATGGTGGAGGAACCTAATTCAGAGGGGCCAGACCCGCGTGGTGGGCCCAGA
GTCAGCTTTGGTATGCTGCGGAAAGAAGTTTCTGAACCAGGTCCAACAACTCTCTGGCAA
TATGTAATTGCTTTTCTGTTGTTCCTTCTCACTATTGGTTCCTCTGTGGAGCTAGGAATT
GCATCTCAGATAACTCGCCTTCCTCCTGAGGTAGTTAAGTACTTTACTGATCCAAATGCA
ATTGAACCACCAGATATGCAGCTTTTATTACCGTTTGTGGATTCTGCTTTACCGTTGGCA
TATGGTGTGCTGGGTGTGCAGTTATTTCATGAAATTGGGCATTTTCTGGCTGCATTTCCA
AGGAATGTGAAATTAAGCATTCCTTTCTTTATTCCAAACATCACTCTTGGAAGCTTTGGA
GCAATCACTCAGTTCAAATCTATTCTTCCCGATCGCAAAGCAAAGGTAGACATTTCTCTT
GCGGGTCCTTTTGCTGGTGCTGCATTGTCTTCTTCCATGTTTGCGGTTGGCCTGTTACTC
TCATCCAATCCTGCTGCTGCTGGAGAGTTGGTTCAGGTTCCTAGCACACTTTTCCAGGGC
TCTTTGCTTCTCGGGCTTATTAGCAGAGCCACTCTTGGTTATGGAGCAATGCATGGTGCA
ATGGTTTCAATCCATCCTCTTGTGATAGCTGGCTGGTGTGGCTTGACTACATCGGCTTTT
AATATGCTGCCAGTTGGATGTCTTGATGGTGGGAGAGCTGTGCAGGGAGCCTTTGGGAAA
GGATCACTTATTGGTTTTGGTTTGGCGACATACACACTTCTGGGCTTGGGCGTGCTTGGT
GGACCTTTGTCACTTCCTTGGGGATTGTATGTGCTTATATGTCAGAGGACACCGGAGAAA
CCATGCTTGAATGATGTAACAGAGGTCGGAAATTGGAGAAAAGCAGCTCTTGGTGTGGCT
ATATTCCTTGTTGTATTGACTCTTCTTCCTGTATGGGATGAACTTGCAGAAGAACTAGGT
ATAGGTCTTGTAACCAGCTTTTGA

Peptide Sequence

PEP ID

XP_016486903.1
PEP Infomation

PREDICTED: LOW QUALITY PROTEIN: probable zinc metalloprotease EGY1, chloroplastic [Nicotiana tabacum]
Sequence

MGTLTSCSFSSMNIRFRLNPPVNYTFSRRIQLKRMSKRNFGRLIIRCSSGSSGNGSSNDS
GSSSDGKLEKDSSNLATVTEETTEERNGGGGASGVENDSDDSPVSISSRPTISTVGSTYN
NFQVDSFKLMELLGPEKVDPSDVKFIKEKLFGYSTFWVTKEEPFGDLGEGILFLGNLRGK
REDVFAKLQSQLSEIMGDKYNLFMVEEPNSEGPDPRGGPRVSFGMLRKEVSEPGPTTLWQ
YVIAFLLFLLTIGSSVELGIASQITRLPPEVVKYFTDPNAIEPPDMQLLLPFVDSALPLA
YGVLGVQLFHEIGHFLAAFPRNVKLSIPFFIPNITLGSFGAITQFKSILPDRKAKVDISL
AGPFAGAALSSSMFAVGLLLSSNPAAAGELVQVPSTLFQGSLLLGLISRATLGYGAMHGA
MVSIHPLVIAGWCGLTTSAFNMLPVGCLDGGRAVQGAFGKGSLIGFGLATYTLLGLGVLG
GPLSLPWGLYVLICQRTPEKPCLNDVTEVGNWRKAALGVAIFLVVLTLLPVWDELAEELG
IGLVTSF

Transcript Sequence

Gene sequence data has not been registered.